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imagej analysis
Imagej Analysis, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 99/100, based on 36188 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/imagej+image+analysis+software/Image+Lab+Software/pm42042916-170-7-16
Average 99 stars, based on 36188 article reviews
Imagej Analysis, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 99/100, based on 36188 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/imagej+image+analysis+software/Image+Lab+Software/pm42042916-170-7-16
Average 99 stars, based on 36188 article reviews
imagej analysis - by Bioz Stars,
2026-09
99/100 stars
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Software:Article Title: Dynamic Role of Omega-3/Omega-6 Polyunsaturated Fatty Acid Ratio in Modulation of Adipogenicity, Lipid Metabolites, and Adipokines Associated with Platelet Hyperactivity Article Snippet: .. The highest p -thromboxane A2 level in the Article Title: Darunavir analog precursors target mitochondrial metabolism in multiple myeloma and CLL. Article Snippet: The membranes were then washed three times with wash buffer (TPBS), incubated with a corresponding horseradish peroxidase-conjugated secondary antibody, and the signals were developed using the enhanced chemiluminescence kit (ClarityTM Western ECL Substrate, Bio‐RadLaboratories Inc.). .. The chemiluminescent signal was detected by using the chemiluminescence system ChemiDoc Imaging System XRS+ (Bio‐Rad, Hercules, California, USA) with the ImageLab software and quantified by densitometric analysis of the bands using the Article Title: Darunavir analog precursors target mitochondrial metabolism in multiple myeloma and CLL. Article Snippet: The membranes were then washed three times with wash buffer (TPBS), incubated with a corresponding horseradish peroxidase‐conjugated secondary antibody, and the signals were developed using the enhanced chemiluminescence kit (ClarityTM Western ECL Substrate, Bio‐ RadLaboratories Inc.). .. The chemiluminescent signal was detected by using the chemiluminescence system ChemiDoc Imaging System XRS+ (Bio‐Rad, Hercules, California, USA) with the ImageLab software and quantified by densitometric analysis of the bands using the Article Title: Heterologous survey of 130 DNA transposons in human cells highlights their functional divergence and expands the genome engineering toolbox. Article Snippet: Article Article Title: Hepatitis B virus-mediated sodium influx contributes to hepatic inflammation via synergism with intrahepatic danger signals Article Snippet: .. Quantitative analysis was performed using Article Title: In vitro -derived medium spiny neurons recapitulate human striatal development and complexity at single-cell resolution. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data ArrayExpress www.ebi.ac.uk/arrayexpress/ E-MTAB-12080 Experimental models: Cell lines Human: H9 (WA-09) hESC line WiCell Research Institute NIHhESC-10-0062 Human: RUES2 Q22 hESC line CHDI Foundation CHDI-90001539 Oligonucleotides Primers for qPCR see Table S1 This paper N/A Software and algorithms FIJI - ImageJ N/A https://fiji.sc/ CFX Manager Software N/A Bio-Rad CellProfiler Image Analysis Software v2.2.1 N/A https://cellprofiler.org GraphPad Prism N/A https://www.graphpad.com/ OriginPro N/A https://www.originlab.com/origin pClamp Software Suit (including Clampex and Clampfit) N/A https://www.moleculardevices.com/ products/axon-patch-clamp-system/ acquisition-and-analysis-software/ pclamp-software-suite?cmp= 7010g000000nOC8&utm_source= AdWords&utm_medium=cpc&utm_ campaign=CNS-Brand_Regional &utm_adgroup={adgroup}&utm_ location=20589&utm_keyword= clampex&utm_device=c&utm_ devicemodel=&utm_placement= &utm_adpostion=&utm_ target=&utm_network=g&utm_ creative=505613889055&gclid= CjwKCAiAsNKQBhAPEiwABI5zUeZwiuJ_6j8CO6oz1fQOjUbcu 03EPnC2nK_W-_yInNTfeQuhEctBoCrqQQAvD_BwE Cellranger 10x Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger Scanpy and dependencies Ingest (Wolf et al., 2018) https://github.com/theislab/scanpy BBKNN (Pola nski et al., 2020) https://github.com/Teichlab/bbknn Scoring cells (Della Chiara et al., 2021) https://github.com/paganilab/ DellaChiara_et_al_2021/tree/main/ sc_RNAseq/scr Velocyto (La Manno et al., 2018) https://velocyto.org/velocyto.py/ tutorial/cli.html#running-velocyto Monocle3 (Cao et al., 2019) https://cole-trapnell-lab.github.io/ monocle3/docs/trajectories/ CellChat (Jin et al., 2021) https://github.com/sqjin/CellChat .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data ArrayExpress www.ebi.ac.uk/arrayexpress/ E-MTAB-12080 Experimental models: Cell lines Human: H9 (WA-09) hESC line WiCell Research Institute NIHhESC-10-0062 Human: RUES2 Q22 hESC line CHDI Foundation CHDI-90001539 Oligonucleotides Primers for qPCR see Table S1 This paper N/A Software and Article Title: Dynamic Role of Omega-3/Omega-6 Polyunsaturated Fatty Acid Ratio in Modulation of Adipogenicity, Lipid Metabolites, and Adipokines Associated with Platelet Hyperactivity. Article Snippet: .. The highest p-thromboxane A2 level in the Imaging:Article Title: Darunavir analog precursors target mitochondrial metabolism in multiple myeloma and CLL. Article Snippet: The membranes were then washed three times with wash buffer (TPBS), incubated with a corresponding horseradish peroxidase-conjugated secondary antibody, and the signals were developed using the enhanced chemiluminescence kit (ClarityTM Western ECL Substrate, Bio‐RadLaboratories Inc.). .. The chemiluminescent signal was detected by using the chemiluminescence system ChemiDoc Imaging System XRS+ (Bio‐Rad, Hercules, California, USA) with the ImageLab software and quantified by densitometric analysis of the bands using the Article Title: Darunavir analog precursors target mitochondrial metabolism in multiple myeloma and CLL. Article Snippet: The membranes were then washed three times with wash buffer (TPBS), incubated with a corresponding horseradish peroxidase‐conjugated secondary antibody, and the signals were developed using the enhanced chemiluminescence kit (ClarityTM Western ECL Substrate, Bio‐ RadLaboratories Inc.). .. The chemiluminescent signal was detected by using the chemiluminescence system ChemiDoc Imaging System XRS+ (Bio‐Rad, Hercules, California, USA) with the ImageLab software and quantified by densitometric analysis of the bands using the Control:Article Title: Cholinergic signaling via muscarinic M1 receptor confers resistance to docetaxel in prostate cancer Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Organisms/strains J:NU (nude) mice Jackson Laboratory Cat# 007850 NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ (NSG) mice Jackson Laboratory Cat# 005557 Oligonucleotides Human ChAT siRNA Santa Cruz Biotech Cat# sc-41919 Human b-arrestin-2 siRNA Santa Cruz Biotech Cat# sc-29208 Human CHRM1 siRNA Origene Cat# SR300807 Control siRNA Santa Cruz Biotech Cat# sc-37007 Recombinant DNA pLVX-AcGFP1-N1 Takara Bio Cat# 632154 pCMV-33FLAG-Myc Sigma-Aldrich Cat# E6401 pLVX-CHRM1 This paper N/A pLVX-CHRM1-L167A This paper N/A pLVX-CHRM1-C391A This paper N/A pLVX-CHRM1-C394A This paper N/A pLVX-CHRM1-P396A This paper N/A pLVX-hM1Dq Armbruster et al. 25 and this paper N/A pLVX-FLAG-hM1Dq This paper N/A pCMV-myc-ERK2-L4A-MEK1 fusion Robinson et al.28 RRID: Addgene_39197 pcw107-FLAG-MKK7-JNK2 fusion Martz et al.29 RRID: Addgene_64618 pcDNA3-FLAG-MKK6 (Glu) Raingeaud et al.30 RRID: Addgene_13518 pCMV delta R8.2 Dr. Didier Trono Lab (Swiss Federal Institute of Technology Lausanne, Lausanne, Switzerland) RRID: Addgene_12263 pCMV-VSV-G Stewart et al.59 RRID: Addgene_8454 Software and algorithms ImageJ NIH https://imagej.nih.gov/ij/ Image Lab 6.1 Bio-Rad Laboratories https://www.bio-rad.com/en-us/ product/image-lab-software HALO Indica Labs https://indicalab.com/halo/ GSEA v4.0.3 Subramanian et al.60 https://www.gsea-msigdb.org/ GraphPad Prism 9 GraphPad https://www.graphpad.com/ Bowtie 2 v2.1.0 SourceForge https://bowtie-bio.sourceforge.net/ RSEM v1.2.15 Li and Dewey61 https://deweylab.github.io/RSEM/ AlphaFold Protein Structure Database Varadi et al.62 https://alphafold.ebi.ac.uk/entry Molecular Operating Environment (MOE) v2020.9 Chemical Computing Group ULC42 https://www.chemcomp.com/ Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Organisms/strains J:NU (nude) mice Jackson Laboratory Cat# 007850 NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ (NSG) mice Jackson Laboratory Cat# 005557 Oligonucleotides Human ChAT siRNA Santa Cruz Biotech Cat# sc-41919 Human b-arrestin-2 siRNA Santa Cruz Biotech Cat# sc-29208 Human CHRM1 siRNA Origene Cat# SR300807 Control siRNA Santa Cruz Biotech Cat# sc-37007 Recombinant DNA pLVX-AcGFP1-N1 Takara Bio Cat# 632154 pCMV-33FLAG-Myc Sigma-Aldrich Cat# E6401 pLVX-CHRM1 This paper N/A pLVX-CHRM1-L167A This paper N/A pLVX-CHRM1-C391A This paper N/A pLVX-CHRM1-C394A This paper N/A pLVX-CHRM1-P396A This paper N/A pLVX-hM1Dq Armbruster et al. 25 and this paper N/A pLVX-FLAG-hM1Dq This paper N/A pCMV-myc-ERK2-L4A-MEK1 fusion Robinson et al.28 RRID: Addgene_39197 pcw107-FLAG-MKK7-JNK2 fusion Martz et al.29 RRID: Addgene_64618 pcDNA3-FLAG-MKK6 (Glu) Raingeaud et al.30 RRID: Addgene_13518 pCMV delta R8.2 Dr. Didier Trono Lab (Swiss Federal Institute of Technology Lausanne, Lausanne, Switzerland) RRID: Addgene_12263 pCMV-VSV-G Stewart et al.59 RRID: Addgene_8454 Software and Article Title: Hepatitis B virus-mediated sodium influx contributes to hepatic inflammation via synergism with intrahepatic danger signals Article Snippet: .. Quantitative analysis was performed using Recombinant:Article Title: Cholinergic signaling via muscarinic M1 receptor confers resistance to docetaxel in prostate cancer Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Organisms/strains J:NU (nude) mice Jackson Laboratory Cat# 007850 NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ (NSG) mice Jackson Laboratory Cat# 005557 Oligonucleotides Human ChAT siRNA Santa Cruz Biotech Cat# sc-41919 Human b-arrestin-2 siRNA Santa Cruz Biotech Cat# sc-29208 Human CHRM1 siRNA Origene Cat# SR300807 Control siRNA Santa Cruz Biotech Cat# sc-37007 Recombinant DNA pLVX-AcGFP1-N1 Takara Bio Cat# 632154 pCMV-33FLAG-Myc Sigma-Aldrich Cat# E6401 pLVX-CHRM1 This paper N/A pLVX-CHRM1-L167A This paper N/A pLVX-CHRM1-C391A This paper N/A pLVX-CHRM1-C394A This paper N/A pLVX-CHRM1-P396A This paper N/A pLVX-hM1Dq Armbruster et al. 25 and this paper N/A pLVX-FLAG-hM1Dq This paper N/A pCMV-myc-ERK2-L4A-MEK1 fusion Robinson et al.28 RRID: Addgene_39197 pcw107-FLAG-MKK7-JNK2 fusion Martz et al.29 RRID: Addgene_64618 pcDNA3-FLAG-MKK6 (Glu) Raingeaud et al.30 RRID: Addgene_13518 pCMV delta R8.2 Dr. Didier Trono Lab (Swiss Federal Institute of Technology Lausanne, Lausanne, Switzerland) RRID: Addgene_12263 pCMV-VSV-G Stewart et al.59 RRID: Addgene_8454 Software and algorithms ImageJ NIH https://imagej.nih.gov/ij/ Image Lab 6.1 Bio-Rad Laboratories https://www.bio-rad.com/en-us/ product/image-lab-software HALO Indica Labs https://indicalab.com/halo/ GSEA v4.0.3 Subramanian et al.60 https://www.gsea-msigdb.org/ GraphPad Prism 9 GraphPad https://www.graphpad.com/ Bowtie 2 v2.1.0 SourceForge https://bowtie-bio.sourceforge.net/ RSEM v1.2.15 Li and Dewey61 https://deweylab.github.io/RSEM/ AlphaFold Protein Structure Database Varadi et al.62 https://alphafold.ebi.ac.uk/entry Molecular Operating Environment (MOE) v2020.9 Chemical Computing Group ULC42 https://www.chemcomp.com/ Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Organisms/strains J:NU (nude) mice Jackson Laboratory Cat# 007850 NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ (NSG) mice Jackson Laboratory Cat# 005557 Oligonucleotides Human ChAT siRNA Santa Cruz Biotech Cat# sc-41919 Human b-arrestin-2 siRNA Santa Cruz Biotech Cat# sc-29208 Human CHRM1 siRNA Origene Cat# SR300807 Control siRNA Santa Cruz Biotech Cat# sc-37007 Recombinant DNA pLVX-AcGFP1-N1 Takara Bio Cat# 632154 pCMV-33FLAG-Myc Sigma-Aldrich Cat# E6401 pLVX-CHRM1 This paper N/A pLVX-CHRM1-L167A This paper N/A pLVX-CHRM1-C391A This paper N/A pLVX-CHRM1-C394A This paper N/A pLVX-CHRM1-P396A This paper N/A pLVX-hM1Dq Armbruster et al. 25 and this paper N/A pLVX-FLAG-hM1Dq This paper N/A pCMV-myc-ERK2-L4A-MEK1 fusion Robinson et al.28 RRID: Addgene_39197 pcw107-FLAG-MKK7-JNK2 fusion Martz et al.29 RRID: Addgene_64618 pcDNA3-FLAG-MKK6 (Glu) Raingeaud et al.30 RRID: Addgene_13518 pCMV delta R8.2 Dr. Didier Trono Lab (Swiss Federal Institute of Technology Lausanne, Lausanne, Switzerland) RRID: Addgene_12263 pCMV-VSV-G Stewart et al.59 RRID: Addgene_8454 Software and Plasmid Preparation:Article Title: Heterologous survey of 130 DNA transposons in human cells highlights their functional divergence and expands the genome engineering toolbox. Article Snippet: Article Real-time Polymerase Chain Reaction:Article Title: In vitro -derived medium spiny neurons recapitulate human striatal development and complexity at single-cell resolution. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data ArrayExpress www.ebi.ac.uk/arrayexpress/ E-MTAB-12080 Experimental models: Cell lines Human: H9 (WA-09) hESC line WiCell Research Institute NIHhESC-10-0062 Human: RUES2 Q22 hESC line CHDI Foundation CHDI-90001539 Oligonucleotides Primers for qPCR see Table S1 This paper N/A Software and algorithms FIJI - ImageJ N/A https://fiji.sc/ CFX Manager Software N/A Bio-Rad CellProfiler Image Analysis Software v2.2.1 N/A https://cellprofiler.org GraphPad Prism N/A https://www.graphpad.com/ OriginPro N/A https://www.originlab.com/origin pClamp Software Suit (including Clampex and Clampfit) N/A https://www.moleculardevices.com/ products/axon-patch-clamp-system/ acquisition-and-analysis-software/ pclamp-software-suite?cmp= 7010g000000nOC8&utm_source= AdWords&utm_medium=cpc&utm_ campaign=CNS-Brand_Regional &utm_adgroup={adgroup}&utm_ location=20589&utm_keyword= clampex&utm_device=c&utm_ devicemodel=&utm_placement= &utm_adpostion=&utm_ target=&utm_network=g&utm_ creative=505613889055&gclid= CjwKCAiAsNKQBhAPEiwABI5zUeZwiuJ_6j8CO6oz1fQOjUbcu 03EPnC2nK_W-_yInNTfeQuhEctBoCrqQQAvD_BwE Cellranger 10x Genomics https://support.10xgenomics.com/ single-cell-gene-expression/software/ pipelines/latest/what-is-cell-ranger Scanpy and dependencies Ingest (Wolf et al., 2018) https://github.com/theislab/scanpy BBKNN (Pola nski et al., 2020) https://github.com/Teichlab/bbknn Scoring cells (Della Chiara et al., 2021) https://github.com/paganilab/ DellaChiara_et_al_2021/tree/main/ sc_RNAseq/scr Velocyto (La Manno et al., 2018) https://velocyto.org/velocyto.py/ tutorial/cli.html#running-velocyto Monocle3 (Cao et al., 2019) https://cole-trapnell-lab.github.io/ monocle3/docs/trajectories/ CellChat (Jin et al., 2021) https://github.com/sqjin/CellChat .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data ArrayExpress www.ebi.ac.uk/arrayexpress/ E-MTAB-12080 Experimental models: Cell lines Human: H9 (WA-09) hESC line WiCell Research Institute NIHhESC-10-0062 Human: RUES2 Q22 hESC line CHDI Foundation CHDI-90001539 Oligonucleotides Primers for qPCR see Table S1 This paper N/A Software and |